LibSBGN: Electronic Processing of SBGN maps
نویسندگان
چکیده
منابع مشابه
Software support for SBGN maps: SBGN-ML and LibSBGN
MOTIVATION LibSBGN is a software library for reading, writing and manipulating Systems Biology Graphical Notation (SBGN) maps stored using the recently developed SBGN-ML file format. The library (available in C++ and Java) makes it easy for developers to add SBGN support to their tools, whereas the file format facilitates the exchange of maps between compatible software applications. The librar...
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MOTIVATION The recently proposed Systems Biology Graphical Notation (SBGN) provides a standard for the visual representation of biochemical and cellular processes. It aims to support more efficient and accurate communication of biological knowledge between different research communities in the life sciences. However, to increase the use of SBGN, tools for editing, validating and translating SBG...
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15 صفحه اولAn algorithm for automated layout of process description maps drawn in SBGN
MOTIVATION Evolving technology has increased the focus on genomics. The combination of today's advanced techniques with decades of molecular biology research has yielded huge amounts of pathway data. A standard, named the Systems Biology Graphical Notation (SBGN), was recently introduced to allow scientists to represent biological pathways in an unambiguous, easy-to-understand and efficient man...
متن کاملSBGNViz: A Tool for Visualization and Complexity Management of SBGN Process Description Maps
BACKGROUND Information about cellular processes and pathways is becoming increasingly available in detailed, computable standard formats such as BioPAX and SBGN. Effective visualization of this information is a key recurring requirement for biological data analysis, especially for -omic data. Biological data analysis is rapidly migrating to web based platforms; thus there is a substantial need ...
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ژورنال
عنوان ژورنال: Nature Precedings
سال: 2010
ISSN: 1756-0357
DOI: 10.1038/npre.2010.4967.1